PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PUB53
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 459aa    MW: 47211.7 Da    PI: 8.6411
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PUB53genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702210.73.7e-652193833154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaes 96 
                   gt++CqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaa+rrerq  + ++ s+aaa a    +++ +k++r   s+++++ s+t++s++++
  Araip.PUB53 219 GGTTTCQDCGNQAKKDCAHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLITGTTPSTAAAVAgssgSTSGAKKPRL-ISSQTTTNSHTSTSNTTP 315
                  5789**********************************************99888877777666655555666666765.5888899999******** PP

       DUF702  97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  +++++t s          lP +++++avf+cvrv+svdd+++e+aYq++v+igG vfkG+LydqG ++
  Araip.PUB53 316 PRSFDTYSshqdasfkekLPGQIRAPAVFKCVRVTSVDDEQDEYAYQAVVKIGGRVFKGFLYDQGHQN 383
                  *****99999*******************************************************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.4E-62221382IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.8E-27223265IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.6E-26334380IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
RERERGLSVV ATTRRLPSDS GAFADWSAPS SSARVAAPVD DLSLGFNAGP PTTAGPTAAA  60
PQGMWPSRSL NYGLAPPDMP PGMVGLRDVF VVAPASSFHH HHHHHNDAVL SSSDLHHLSN  120
NSSNNPATAL GVGVGVGVIP LLTATPCLDQ DNILTGRART AASGGTTGGG IQFWQEQQPH  180
HHQYLKKQGF IDHNIGANLV PGGGSGSGSG DGGASNSGGG TTTCQDCGNQ AKKDCAHRRC  240
RTCCKSRGFD CPTHVKSTWV PAARRRERQL ITGTTPSTAA AVAGSSGSTS GAKKPRLISS  300
QTTTNSHTST SNTTPPRSFD TYSSHQDASF KEKLPGQIRA PAVFKCVRVT SVDDEQDEYA  360
YQAVVKIGGR VFKGFLYDQG HQNHSNRDSN NSNNNVYPNL SELHLGGGGG GGSGGGGRNG  420
VSSSSPMLDP SDVYAASGGG GGGGVGGLLG GSTYGNPIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973405.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1, partial
SwissprotQ94CK93e-81LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A118K4X71e-127A0A118K4X7_CYNCS; Lateral Root Primordium type 1, C-terminal
STRINGGLYMA02G44860.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-55Lateral root primordium (LRP) protein-related